Whole Wheat High Protein Bagels

Name: Whole Wheat High Protein Bagels
Prep time: 30 min
Cook time: 25 min
Total time: 55 min
Yield: 8 bagels
Ingredients: 2 cups whole wheat flour; 1 cup high-protein bread flour; 1 packet (2 1/4 tsp) active dry yeast; 1 tablespoon honey; 1 teaspoon salt; 1 cup warm water; 2 tablespoons sesame seeds (optional)

Highlighted under: Healthy Bites

I absolutely love making these Whole Wheat High Protein Bagels in my kitchen! They offer an incredible chewy texture paired with a nutty flavor that is hard to resist. It feels so rewarding to make bagels from scratch, and knowing they are packed with protein makes them even better. My family enjoys them fresh out of the oven, and I often bake a batch to keep in the fridge for busy mornings. These bagels have become a staple in our house, perfect for toasting and topping with cream cheese or even an egg.

Created by

Cassidy Moore

Last updated on 2026-02-10T16:47:36.398Z

When I first attempted to create these Whole Wheat High Protein Bagels, I wanted a hearty breakfast option that wouldn’t make me feel guilty. After experimenting with different flours and blends, I found that whole wheat provides a perfect base that not only contributes to the protein content but also adds a lovely, wholesome flavor.

I’ve learned that boiling the bagels before baking gives them that classic chewy texture and shine that you find in traditional bagels. Making them at home means I can control the ingredients, and I love customizing them with seeds or spices for an extra kick.

Why You Will Love This Recipe
Nutritious and satisfying, perfect for breakfast or a snack
Versatile; great with both sweet and savory toppings
Made with wholesome ingredients for a healthier option

Understanding Whole Wheat and Protein Flour

Using a combination of whole wheat flour and high-protein bread flour in this bagel recipe is essential for achieving the perfect texture. Whole wheat flour contributes a nutty flavor and adds fiber, but it can also make the bagels denser. The high-protein bread flour balances this out by providing the right structure and chewiness. This combination not only enhances flavor but also ensures your bagels maintain a satisfying bite, characteristic of traditional bagels.

Incorporating protein-rich ingredients like Greek yogurt or cottage cheese into your bagel dough can elevate the protein content further while also adding moisture. If you're looking for an alternative, you could consider using spelt flour or even chickpea flour, keeping in mind that these choices may alter the flavor profile slightly and require adjustments in hydration.

Perfecting the Bagel Shape and Boiling Technique

Shaping the bagels correctly is crucial for the authentic look and texture. After dividing the dough, make sure each piece is rolled into a smooth ball with no cracks, which can cause them to deform during boiling. When punching a hole in the center, aim for about 1-2 inches in diameter, as the bagels will swell during cooking. If the shape collapses, gently re-roll to restore the structure before boiling.

The boiling step serves a functional purpose: it creates that iconic chewy crust. Make sure your water is at a rolling boil before adding the bagels, and avoid crowding the pot to maintain the temperature. Boiling each bagel for 1-2 minutes on each side allows the starches to gelatinize, resulting in a shiny exterior. If you desire a thicker crust, increase the boiling time slightly.

Ingredients

Bagel Ingredients

2 cups whole wheat flour
1 cup high-protein bread flour
1 packet (2 1/4 tsp) active dry yeast
1 tablespoon honey
1 teaspoon salt
1 cup warm water
2 tablespoons sesame seeds (optional)

Ensure that all ingredients are at room temperature for best results.

Instructions

Prepare the Dough

In a mixing bowl, combine the warm water and honey. Sprinkle the yeast on top and let it sit for about 5 minutes until foamy. Gradually add the whole wheat flour and bread flour, along with the salt, mixing until a dough forms. Knead the dough for about 10 minutes on a floured surface until smooth and elastic.

First Rise

Place the dough in a greased bowl, cover it with a damp cloth, and let it rise in a warm place for approximately 30 minutes, or until doubled in size.

Shape the Bagels

Punch down the dough and divide it into 8 equal pieces. Roll each piece into a ball, then poke a hole in the center with your finger and stretch to form a bagel shape.

Boil the Bagels

Preheat your oven to 425°F (220°C). Bring a large pot of water to boil. Gently drop the bagels into the boiling water, cooking for about 1-2 minutes on each side. Remove with a slotted spoon and place them on a baking sheet lined with parchment paper.

Bake

Sprinkle sesame seeds on top if desired. Bake in the preheated oven for 20-25 minutes, or until golden brown.

Allow the bagels to cool on a wire rack before slicing.

Pro Tips

Feel free to experiment with different toppings like poppy seeds or everything bagel seasoning for variety. Store the bagels in an airtight container to keep them fresh.

Storing and Reheating

Once you've baked your bagels, let them cool completely before storing. Place them in an airtight container, and they will last up to a week in the refrigerator. If you find yourself with extra bagels, consider freezing them. Individually wrap each bagel in plastic wrap and store them in a zip-top bag. They can be frozen for up to three months without sacrificing flavor or texture.

When it’s time to enjoy your bagels, a quick reheating will refresh them beautifully. Either toast them in a toaster or warm them in an oven set to 350°F (175°C) for about 10 minutes. This method helps revive their chewy exterior and soft interior, mimicking the experience of eating them fresh out of the oven.

Enhancing Flavor with Toppings

Consider the endless possibilities when it comes to toppings for your bagels. Beyond the classic cream cheese, experiment with avocado, smoked salmon, or your favorite nut butter for a satisfying meal. If you're in the mood for a sweeter touch, spread some honey or your choice of jam on top. For added texture, top with more sesame seeds, everything bagel seasoning, or even a sprinkle of dried herbs before baking.

To further customize your bagels, try incorporating herbs, spices, or even vegetables directly into the dough. Adding ingredients like garlic powder, dried onion, or finely chopped sun-dried tomatoes can inject flavor into every bite. Just remember that adding moisture-rich ingredients may require you to adjust the flour to maintain the right dough consistency.

Questions About Recipes

→ Can I use a different type of flour?

Yes, you can substitute all-purpose flour, but keep in mind that the protein content will change, affecting texture.

→ How long do these bagels stay fresh?

They can stay fresh for up to 3 days at room temperature, but they are best enjoyed within the first two days.

→ Can I freeze the bagels?

Absolutely! Once cooled, wrap them tightly in plastic wrap and store in the freezer for up to 3 months.

→ Is it necessary to boil bagels?

Boiling bagels is essential for achieving that classic chewy texture and shiny crust.